Maple Oat Chocolate Chip Cookies

My perfect whole wheat chocolate chip cookie is crisp on the outside and fluffy on the inside, with a satisfying crunch.

16 Reviews
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whole grain chocolate chip cookie recipe

I have been on the hunt for the perfect whole wheat cookies for over a year now. A girl can only eat so many cookies, though, so it has been a long and slow process that paused during a crazy hot summer. In my attempt to narrow down the possibilities, I searched around for the highest authorities on chocolate chip cookies and sampled the most promising cookie recipes I could find.

First, I tried baking a whole wheat version of The New York Timesโ€™ chocolate chip cookies during a snow storm last year. I baked a few cookies with the fresh dough and then let the dough rest overnight as directed. From that, I learned that cookies really are better if you let the dough age for 12 to 72 hoursโ€”the dry dough ingredients soak up the rest of the ingredients over time, which ultimately produces a better cookie. Iโ€™ve tried it and itโ€™s true.

The New York Times cookies, though? Everyone agreed they were really good, but they werenโ€™t what I was looking for (blasphemy to some of you, Iโ€™m sure!). They didnโ€™t have enough of that gooey, brown sugary goodness on the inside. They were a little too crisp, too ready to snap.

Then Molly Wizenberg waxed poetic about Kim Boyceโ€™s whole grain chocolate chip cookies in her cookbook, Good to the Grain. Molly knows her stuff, but the cookies werenโ€™t toothsome enough for me.

On the upside, I took one of my favorite pictures of Cookie the day I made those cookies:

dog begging for a cookie

So a couple of months ago, I signed up for the Great Food Blogger Cookie Swap, hosted by Lindsay of Love & Olive Oil and Julie of The Little Kitchen. Basically, it entailed baking three dozen cookies and sending a dozen to three bloggers, while receiving three dozen from three other bloggers. Itโ€™s a logistical nightmare that I wouldnโ€™t want to organize but I thought it would be fun to participate!

True to form, I waited until the day before the deadline to decide what to bake. I cracked open Heidi Swansonโ€˜s Super Natural Cooking and came across her recipe for mesquite chocolate chip cookies. I decided to continue my quest for the perfect chocolate chip cookie and gave her recipe a shot.

whole wheat chocolate chip cookie dough

I based the recipe below off of Heidiโ€™s recipe, but made several notable substitutions and ended up with three dozen of my ideal chocolate chip cookiesโ€”golden on top, crisp around the edges, with a soft, moist interior oozing with dark chocolate chips. To get there, I traded easier-to-find whole spelt flour for expensive mesquite flour (they both have a slightly malty flavor and low gluten content, but feel free to use more whole wheat pastry flour instead). I swapped 1/3 cup maple syrup for a 1/2 cup of raw sugar, which is the recommended substitution ratio in the Green Market Baking Book. Next time, Iโ€™ll try reducing the raw sugar by another half cup in favor of an additional 1/3 cup of maple syrup.

I didnโ€™t want oatmeal cookies, and my arm was giving up after mixing in even a half cup of oats, so I stopped at one cup. These are not chewy oatmeal cookies, mind you. The oats add a bit of extra fluffiness. Theyโ€™re magical. Lastly, I mixed a hint of cinnamon into the dough, let the dough rest overnight and sprinkled the warm cookies with Maldon sea salt, which is a bit of a splurge but worth its weight in gold. However, my idea of a perfect recipe is one that is accessible, so itโ€™s optional.

whole wheat chocolate chip cookies

By the time I was ready to put the third dozen in the oven, I realized that eleven minutes is too long. Ten minutes is just right. I was apprehensive that the cookies might dry out during shipping but carried on.

I was so relieved when I received this sweet facebook comment from one of the recipients, Andrea: So, I heard my son in the kitchen checking out the cookies we got and heard in this appalled voice, โ€œYou got to be kidding, whole wheat?โ€. The next thing I see is, him sitting down with about 5 cookies and a glass a milk trying to tell me, with a mouth crambed full of cookies, how good they are and how much he loves them. Thanks and great job, the were delicious.

whole wheat chocolate chip cookies

Apologies to the two recipients who didnโ€™t receive their cookies in a pretty box, but in recycled book boxes instead. The white box was actually recycled from one of the dozens of cookies I received. Call me lazy and cheapโ€ฆ or eco-friendly and hip. ;)

box of chocolate chip cookies

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Maple Oat Chocolate Chip Cookies

  • Author: Cookie and Kate
  • Prep Time: 25 mins
  • Cook Time: 30 mins
  • Total Time: 55 minutes
  • Yield: 36 big cookies 1x

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 16 reviews

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These are my ideal whole wheat chocolate chip cookieโ€”crisp on the outside, and as fluffy as their all-purpose counterparts on the inside. Maple syrup, cinnamon and a slight sprinkling of Maldon salt make them extra special.

Ingredients

Scale
  • 2 ยฝ cups whole wheat pastry flour
  • 1 cup whole spelt flour (or an additional cup of whole wheat pastry flour)
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • ยพ teaspoon fine salt
  • ยพ teaspoon ground cinnamon
  • 1 cup (2 sticks) unsalted butter, room temperature
  • 1 ยฝ cups raw (turbinado) sugar
  • โ…“ cup real maple syrup
  • 3 large eggs
  • 1 tablespoon pure vanilla extract
  • 1 cup rolled oats
  • 2 cups semisweet chocolate chips (60% or higher)
  • Maldon salt (optional), for sprinkling

Instructions

  1. Preheat the oven to 375 degrees and line a baking sheet with parchment paper.
  2. In a medium bowl, whisk together the flours, baking soda, baking powder, salt and cinnamon.
  3. In a large bowl or stand mixer, beat the butter until light and fluffy, then beat in the sugar.
  4. Beat in the eggs one at a time.
  5. Whisk in the vanilla extract and maple syrup.
  6. Add the dry ingredients in 3 increments, stirring between each addition. Once youโ€™re done mixing in the last of the dry ingredients, you should have a moist, uniformly brown dough.
  7. Stir in the chocolate chips and oats by hand until they are evenly distributed. Put some muscle into it!
  8. Drop about two tablespoon of dough per cookie onto the baking sheet, leaving about two inches of space around each cookie.
  9. Bake for 10 minutes, until the tops are just golden. Err on the side of underbaking.
  10. Allow the cookies to set on the baking sheet for about a minute and transfer them to a cooling rack. If desired, sprinkle with a pinch of Maldon salt. Serve with a glass of milk, of course!

Notes

Based on Heidi Swansonโ€˜s recipe for mesquite chocolate chip cookies in Super Natural Cooking.
Yields 3 dozen big cookies (about 3 ยฝ to 4 inches in diameter)

Nutrition

The information shown is an estimate provided by an online nutrition calculator. It should not be considered a substitute for a professional nutritionistโ€™s advice. See our full nutrition disclosure here.

Kate and Cookie

HELLO, MY NAME IS

Kathryne Taylor

I'm a vegetable enthusiast, dog lover, mother and bestselling cookbook author. I've been sharing recipes here since 2010, and I'm always cooking something new in my Kansas City kitchen. Cook with me!

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Comments

  1. Sarah @ pรฃo e queijo

    Thanks for sharing the recipe! I love your natural recipes, and these cookies look divine. Baking with whole grains can sometimes produce undesirable results, but it seems like youโ€™ve found the perfect formula for great cookiesโ€ฆ Iโ€™ll have to try them!

    1. kate

      Thanks, Sarah! Iโ€™m pretty obsessed with finding/devoping the best baked whole grain recipes. White flour makes me feel lousy; Iโ€™m so happy I finally found the chocolate chip cookie I was hunting for!

  2. Melissa

    They look perfecto! And so does your cute packaging. I like wheat flour in my chocolate chip cookies too. And I like to grind up the oats. They save your shoulder when mixing :)

  3. la domestique

    Looks like the cookie swap was fun! Your picture of cookie the pup is fantastic- youโ€™ve gotta frame it!

  4. sara

    These look wonderful! Love using whole grains for cookiesโ€ฆyum! :)

  5. dana @ my little cel

    Dang, if these are that good, Iโ€™m bookmarking them to make and take to my grandmaโ€™s house for Christmas. Thanks for sharing!

    1. kate

      Do it! I bet they wonโ€™t know theyโ€™re made with whole wheat flour until you tell them. Thatโ€™d be a fun experiment. :)

  6. Danae

    These were SO good! If you hadnโ€™t said they were whole wheat, I would have never known. And I didnโ€™t even know there was spelt flour in it until I saw it here. Oats, spelt, whole wheatโ€“it makes me feel better about eating two of these for breakfast this morning! :) Thanks so much for these!

    1. kate

      Iโ€™m so happy that you enjoyed the cookies, Danae! Iโ€™m all for cookies for breakfast. :)

  7. Jacqui

    I like my chocolate chip cookies just as youโ€™ve described these! Iโ€™m going to make a batch for our trip down to San Francisco this weekend, thanks! And it must have been nice to know you converted a teenager to whole grain cookies too : )

    1. kate

      Oh please let us know how those cookies turn out, Jacqui! I love converting people to whole grains. First my younger brothers, now Andreaโ€™s son! Iโ€™m on a mission. :)

  8. niki

    that is such a cute photo of cookie!!

  9. Katie

    These look great! I do love Kim Boyceโ€™s whole wheat chocolate chip cookies, but Iโ€™m excited to try another great recipe! I have a maple walnut oatmeal raisin cookie recipe using spelt flour which turned out brilliantly the first time I made it and every time since has been a horrific dry crumbly mess. Iโ€™ve clearly made a mistake somewhere in my notes and I have to figure out where! Maybe letting the dough cure overnight will do the trick.

  10. zazzie

    aaahโ€ฆ and the pictures.. โ™ฅ

  11. Katrina

    These cookies sound lovely!

  12. Heidi @ Food Doodles

    These look wonderful :D I love Heidiโ€™s cookie recipes โ€“ Iโ€™ve never had one turn out badly. Iโ€™m always watching for more whole wheat cookie recipes, I canโ€™t wait to give these a try โ€“ I canโ€™t believe I havenโ€™t tried a whole wheat chocolate chip cookie recipe yet!

  13. erin

    Yum! I wish I could have been on the receiving end of these cookies- how delicious!

  14. chinmayie

    I am so going to try this! I generally never bake with eggs but your recipe tempts me :)

  15. Karen

    Those look delicious!!! Definitely will have to try these out asap :)

  16. thelittleloaf

    Your cookies look wonderful and well worth all the experimentation to get there! I donโ€™t like too much oatmeal in my cookies, so think this recipe would be perfect for me. Gorgeous photos and I love the one with your doggy in it! :-)

  17. Val

    The cookies look good and the pic of Cookie is priceless!

  18. Cassandra

    I had to come and visit and thank you for this awesome recipe! I just put my second batch in the oven and just finished my third (shhh!) cookie! These are really, really good!!! The dough has an extremely slight cinnamon-y after-taste (YUM!) and a very light and fluffy texture. These cookies do not give you that โ€œBLAHโ€ feeling afterwards that I so often get from eating store-bought or non-whole wheat cookies. This recipe is definitely going the favorites box!

    I feel good eating food with health benefits, so these cookies were even better knowing that they were made with whole wheat and dark chocolate. Thank you again for this recipe!

    1. kate

      Hi Cassandra, Iโ€™m sorry I didnโ€™t respond to your comment sooner, but I just wanted to make sure you know how much I appreciate it! I love hearing from readers who try my recipes and Iโ€™m delighted that you enjoyed these chocolate chip cookies!

  19. anh@anhsfoodblog.com

    Thanks for sharing your experience with us. I have bookmarked the recipe to try soon :)

  20. Jess @ Cheese Please

    These look great! I too have been on the quest for the perfect yet good for you chocolate chip cookie, as they are they only cookie my husband ever requests :) Thanks for posting!

  21. Sylvie @ GitK

    I have yet to try this version but I have heard so many wonderful things about it that it wonโ€™t be long now before I do!

  22. Jenzy

    Ooo, so happy to have found your website, canโ€™t wait to give a few of these recipes a try!

  23. Ashley@BakerbyNature

    Iโ€™m going to bake these up over Christmas break for sure! Why must every single thing you make look so tantalizing?! xx

  24. Kasey

    Oh man, your cookies look divine. I actually obsess over those Kim Boyce cookies myself, but I see your point. Plus, Heidiโ€™s dessert recipes rarely fail for me. I love the addition of the maple syrup. Sounds like I need another chocolate chip cookie in my life. :)

  25. Deborah

    We like our cookies the same way โ€“ so I definitely want to try these out!!

  26. Kathryn O

    I think that photo of your dog is probably the cutest thing I have ever seen! Also: these cookies look to die for. If a kid can get excited about whole wheat, you know youโ€™re doing something right! ;)

  27. Carroll

    Love that you have a โ€œspecial helperโ€. My dog likes to help too! :)

  28. Anne

    I love this recipe! Only, here in the Netherlands maple syrup is quite hard to find and the stuff you can find is from poor quality and very expensive. Do you have a suggestion for substituting the maple syrup?

    1. kate

      Hi Anne, I was not aware that maple syrup is so expensive outside of North America, but that makes a lot of sense. The original recipe called for two cups sugar and no maple syrup, so I would suggest perhaps using one cup of raw sugar and one cup of brown sugar instead of the sugar/maple syrup amounts listed above. Or you may like to try honey instead of maple syrup. You should be able to swap them one for one. Please let us know how it goes if you try it!

      1. Anne

        I gave them a try yesterdayโ€ฆ and then I made them again today!

        I only made one third of the recipe, as a try out, but I wished I made the whole recipe, since these cookies are a dream. They donโ€™t taste at all like they are healthy, the whole wheat flour gives them extra flavour, so they are extra tasty, and it also fills you up. Where โ€œnormalโ€ cookies leave me unsatisfied, these cookies are very satisfying. And it makes me feel like I am indulging in a healthy way, because all the whole wheat and oats in there, and because they are not to sweet. This is as healthy as cookies get without tasting healthy. This will definitely a recipe that I will make more often! Especially since they donโ€™t make my tummy bloat like a gigantic balloon like store bought cookies do!

        I used only whole wheat flour, and substituted the maple syrup with brown sugar as suggested, which worked out perfectly. I didnโ€™t let the batter rest for long, but I am sure that will improve them even more. And making sure that they are ever so slightly underbaked is indeed very important.

        Thank you for sharing this great recipe!

  29. Anne

    I tried the recipe yesterday, with raw and brown sugar, and fully whole grain flour(didnโ€™t have spelt flour on hand). Since I was inpatient, I didnโ€™t rest the dough, I just baked them immediately. And they are really lovely! They donโ€™t taste like healthfreak cookies, they taste like very good normal cookies. And they are much more satisfying than ordinary cookies, since they fill you up nicely, you canโ€™t keep eating them. I do pity that I only made 1 dosen, because they seem to keep very wellโ€ฆ This will be my new all time cookie recipe!

  30. Anne

    I tried the recipe yesterday, with raw and brown sugar, and fully whole grain flour(didnโ€™t have spelt flour on hand). Since I was inpatient, I didnโ€™t rest the dough, I just baked them immediately. And they are really lovely! They donโ€™t taste like healthfreak cookies, they taste like very good normal cookies. And they are much more satisfying than ordinary cookies, since they fill you up nicely, you canโ€™t keep eating them. I do pity that I only made 1 dosen, because they seem to keep very wellโ€ฆ This will be my new all time cookie recipe!

  31. Nicole

    I finally found my personal favorite chocolate chip cookie recipe! I came across your site as I was searching for a whole wheat choco chip cookie recipe. I was a little worried because of the amount the recipe would make, but as soon as I tried the first batch I put in, before I knew it, I had eaten, well, one too many. oops :) Now I have all these amazing โ€œless unhealthyโ€ cookies that i have to find friends to give them away to! I made a few changes, using more brown sugar in place of the regular sugar and half the oatmeal (I grew lazy to stir)โ€ฆ. still amazing! Thank you so much for sharing this recipe! Iโ€™m excited to try your other ones!

    1. kate

      Hi Nicole, thanks for the comment! I was sad when I ran out of those cookies. I think itโ€™s time to make another big batch! I think Iโ€™ll try substituting brown sugar for some of the raw sugar next time, too.

  32. Nicole

    :) So I just wanted to share with you the remarks I got from those who tried this recipeโ€ฆ They absolutely loved it! Especially my boyfriend, who ate pretty much a batch and a half by himself. and his friends too. and no one believed me when I told them that it was much healthier than the average chocolate chip cookie. Now everyone canโ€™t wait for the next time I bake, as I am a culinary freak. Thank you so much for sharing this. I will try experimenting with maybe other candies and fruits! I now often go back to your site for recipe ideas

  33. Nicole

    :) So I just wanted to share with you the remarks I got from those who tried this recipeโ€ฆ They absolutely loved it! Especially my boyfriend, who ate pretty much a batch and a half by himself. and his friends too. and no one believed me when I told them that it was much healthier than the average chocolate chip cookie. Now everyone canโ€™t wait for the next time I bake, as I am a culinary freak. Thank you so much for sharing this. I will try experimenting with maybe other candies and fruits! I now often go back to your site for recipe ideas

  34. Holly

    Excellent cookies Kate! So nice to find a recipe that uses whole wheat flour and oats (and youโ€™d never know!)

    I chopped up some 70% dark chocolate rather than using choc chips as I love large chunks of chocolatey goodness in my cookies :) And I used just 1tbs dough rather than 2 and they baked perfectly in 5 mins.

    Next time I might cut back on the sugar by 1/2 cup as 1.5 cups plus the maple syrup seems a lot (and I donโ€™t think I would miss the 1/2 cup).

    Delicious, this has gone into my โ€œmake againโ€ pile of recipes! Thank you so much :)

    1. Kate

      Thanks for commenting, Holly! Iโ€™m so glad you enjoyed the recipe. Your substitutions sound great. Let me know if you try reducing the sugar; the recipe does call for more sugar than I usually like to use, but it does make a lot of cookies.

  35. Nancy

    Hi,
    Where do i purchase Whole wheat pastry flour? I have white wheat flour in my pantry, would it work for this recipe?
    :)

    1. Kate

      Hi Nancy. great question. Whole wheat pastry flour is pretty readily available in health food stores these days. It is milled more finely than regular whole wheat flour, so I generally find that it works well in recipes that call for all-purpose flour. However, I bet your white whole wheat flour would be fine to use instead!

      1. Nancy

        Thank you very much for the reply! Love your recipe Blog

  36. Sue

    Would buckwheat flour work in place of the spelt flour?

    1. Kate

      Hi Sue, it might work, but your cookies will probably be a little less fluffy. If you want to be on the safe side, maybe replace the 1 cup spelt flour with 1/2 whole wheat pastry flour and 1/2 buckwheat.

  37. Misty

    How can I make this dairy & egg free?

    1. Kate

      Iโ€™m sorry, I havenโ€™t tried so Iโ€™m not sure. You could try using coconut oil in place of butter and flax eggs in place of the real eggs.

  38. Chris

    Delicious. Love the not-overly-sweetness. Still havenโ€™t found whole wheat pastry flour, but theyโ€™re great with regular ww. Also amazing with a dab of peanut butter on top!

  39. Jess

    I love this blog, and itโ€™s now my go-to source for low- or no-sugar-added and whole wheat recipes. I typically try to avoid regular sugar, even raw sugar, so I tried this recipe with all maple syrup, about 1 cup total. They turned out so good! I did half of them with regular chocolate chips for my kids, and the other half with stevia-sweetened chocolate chips, and they are delicious! Very moist, great flavor :) Thanks for the great recipe!

    1. Kate

      Awesome! Thanks for letting me know, Jess. Iโ€™m looking forward to trying that.

  40. avril

    Have to ask- can homemade biscuits be frozen and at what point? (Dough or cooked) we keep making them and then have to throw some away as there are only so many a twelve month old and a mum can eat when dads on a diet :) please help! (Love your site โ€“ thank goodness for all its yumminess )

    1. Kate

      Hey Avril, Iโ€™ve frozen these cookies (in cooked form) with success! I suppose you could probably also freeze cookie-sized dough balls and bake them when the craving strikes, too.

  41. Katie

    Just revived this recipe with a holiday twist. I used regular whole wheat flour (and no spelt) and replaced the chocolate chips with mini holiday colored M&Ms. They came out light and airy and my family loved them! Even with the candy bits they feel like a healthier, heartier holiday cookie.

  42. sandra

    perfect not too sweet cookies! thank you! Iโ€™m really enjoying cooking/baking from your cooking blog. I have made several things from it and each time the dishes come out delicious. Glad I found your blog :-)

  43. Shelby

    This is my familyโ€™s favorite healthy chocolate chip cookie recipe!

    1. Kate

      Awesome! Thanks, Shelby!

  44. Barbara

    I got serious love after I baked these cookies in my household. I make โ€œbetter cookies than grandmaโ€ apparently!!!
    Thank you all the way from Hong Kong. Xx
    btw: storing the dough in the fridge overnight works great!

    1. Kate

      Hello from afar! Thanks for sharing, Barbara. I appreciate the review.

  45. Taija Haller

    These are my new favorite chocolate chip cookies! They are delicious โ€“ love the texture from the oats and the extra zing! from the sea salt on top.

    1. Kate

      Thank you, Taija!

  46. lisa

    These look so good! Can regular whole wheat flour be used?

    1. Kate

      Yes, I believe so!

  47. Toni

    I want to try them, but could I substitute the sugar for maple syrup? I donโ€™t eat raw sugar in menus.

    1. Kate

      Hey Toni, I never could figure out how to make these with only maple syrup (no granulated sugar). Iโ€™ve never been able to reach a standard cookie consistency using all liquid sweeteners. Do you eat coconut sugar? Itโ€™s minimally refined and you can use all coconut sugar in my โ€œamazingโ€ chocolate chip cookies recipe.

  48. Emma

    the Maple Oat Chocolate Chip Cookies recipe looks yummy but is not sugar free? I thought this was a gluten free, dairy free and sugar free blog??

    1. Kate

      Hi Emma, this isnโ€™t a sugar free blog, but a vegetarian blog. I try to provide healthy and allergy alternatives when I can. Sorry for any confusion!

  49. Barbara

    Hi. These sound great. I canโ€™t use sugar at all but can use maple syrup, agave, molasses or honey. What amount of any of these would you use to substitute for sugar?

    1. Kate

      Hi Barbara, I would have to try them as it would change the recipe. Sorry!